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Refresh Jupyter in your browser, you should now have your environment available as a kernel.

R Notebook

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Code Block
languagebash
conda create --name <new_environment_for_R> --clone /albedo/soft/sw/conda-sw/jupyterhub-<newest_version_available>/

Then, activate your new environment and install the R packages you need, either with the R package manager or with conda (as in the following example)To create an R kernel for your own instance of Jupyter load the R module:

Code Block
languagebash
condamodule activate <new_environment_for_R>
conda install r-<my_package>load r

Then install the kernel with IRkernel, making sure you name it differently than just simply "R" (e.g. "my_R_kernel")Finally, create your new R kernel:

Code Block
languagebash
Rscript -e 'IRkernel::installspec(name="<new<your_environmentR_for_R>kernel>", displayname="<new<your_environmentR_for_R>kernel")'

Refresh Jupyter in your browser, you should now have your environment available as a kernel. Whatever you had installed in your instance of R should be available via that kernel's notebooks.

Singularity

Warning
titleStill under constuction

Singularity support is still under construction!

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